Physiologically Based Pharmacokinetic (PBPK) Modeling and Simulations. Sheila Annie Peters

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Physiologically Based Pharmacokinetic (PBPK) Modeling and Simulations - Sheila Annie Peters

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hepatic efflux, blood–brain barrier (P‐gp and BCRP), hepatic uptake (OATP1B1 and OATP1B3) and renal tubular uptake/bidirectional transport (OAT1, OAT3, OCT2), and efflux (MATE1 and MATE2/K). Renal DDIs are rare and associated with significantly lower AUC ratios compared with hepatic DDIs. Victims of renal DDIs are generally compounds whose eliminations are largely dependent on the renal route. Examples include metformin, a substrate of OCT2 and MATEs, and the endogenous compound creatinine, a substrate of OAT2, OCT2, and MATEs, the secretion of both of which are reduced by cimetidine, known to inhibit OCT2 and MATEs. Cimetidine also reduces the renal clearance of bisoprolol, nicotine, and procainamide (Ayrton and Morgan, 2001; Shitara et al., 2009; Shitara et al., 2009; Kirch et al., 1987; Somogyi et al., 1987; Bendayan et al., 1990; Ayrton and Morgan, 2001; Shitara et al., 2009; Ivanyuk et al., 2017). Uptake transporters act in concert with efflux transporters to eliminate toxins (e.g., OCT2 and MATE1, MATE2‐K). Therefore, for secreted drugs that are reliant on transporters for overcoming the membrane barrier, the inhibition of efflux transporters could result in an accumulation of drugs in the cytoplasm of proximal tubular cells, leading to toxic effects in the kidney (nephrotoxicity). Perpetrators of renal DDIs are usually acids or bases with high therapeutic doses and inhibit the renal uptake transporters OATs 1 and 3 or OCT2. Probenecid inhibits the renal OATs and causes drug–drug interactions when coadministered with hydrophilic acids that are predominantly cleared by the kidney, such as penicillin, famotidine, and chlorothiazide (Inotsume et al., 1990; Ayrton and Morgan, 2001; Ho and Kim, 2005; Shitara et al., 2009). Decreases in renal function with age and disease will impact the extent of drug interaction.

      Complex drug–drug interactions (DDIs) with potential involvement of multiple elimination pathways and interaction mechanisms is challenging. When a transporter and an enzyme are involved in DDI, then the net effect depends on whether the inhibitor or the substrate of the enzyme is dependent on the transporter for access to the enzyme. Understanding the mechanisms underlying complex DDIs are challenged by the lack of specific probe substrates for transporters (Jones et al., 2020). Rifampicin through its activation of the nuclear receptor, PXR, induces CYP3A4. Additionally, it also inhibits OATP1B1 uptake transporter. Thus, a single dose of rifampicin caused an 8‐fold increase in the in the exposure of atorvastatin (Lau et al., 2007) However, multiple doses of rifampicin caused a decrease in the exposure of atorvastatin, due to induction (Backman et al., 2005). When multiple inhibitors inhibit multiple enzymes, the overall effect is additive, but if they inhibit the same enzyme, then the net effect defaults to the most potent inhibitor.

      A candidate drug must be evaluated for its potential to be a perpetrator or victim of DDI with likely coadministered drugs. In vitro methods that aid this assessment focus on reversible/irreversible inhibition or induction mediated by an enzyme or a transporter.

      Determination of IC 50 and K i for reversible enzyme‐ or transporter‐mediated inhibition: A commonly used measure of inhibitory potential of a drug is the inhibitor concentration required to inhibit 50% of the metabolic rate of a probe substrate (IC50 ) in vitro. IC50 can be converted to absolute inhibition constant (Ki ) using the Cheng–Prusoff equation (Yung‐Chi and Prusoff, 1973). For a competitive enzyme inhibition, Ki is given as IC50 /(1+[S/Km ]), where S is the substrate concentration and Km is the Michaelis–Menten constant for the substrate. Thus, when measurement of IC50 is done at substrate concentrations that are less than or approaching the Km, IC50 is less than Ki for a reversible enzyme inhibition. When the substrate concentration exceeds its Km, IC50 will overestimate Ki . For noncompetitive inhibition, IC50 = Ki, and enzyme inhibition is independent of substrate concentration. Assumption of the mechanism of inhibition is thus necessary to get Ki from IC50 . The in vitro models employed to study enzyme inhibition are hepatocytes or microsomes, depending on the role of phase II enzymes in the metabolism of the substrate. The advantage of these systems is the presence of enzymes in proportions found in vivo. A disadvantage of these systems is that only partial inhibition can be observed for substrates lacking specificity. In these cases, recombinant systems can be useful. Partial inhibition is also attributable to poor solubility of the inhibitor. The preferred in vitro systems for quantifying inhibitory potency of transporter inhibitors are Caco‐2 cells (do not distinguish between transporters), HEK, or MDCK transfected cells for uptake transporters and membrane vesicles for efflux transporters. The inhibitor and substrate concentrations used in the in vitro assays should be clinically relevant. If the inhibitor concentrations in the assay are in excess of the clinical concentrations, the inhibitory potential determined would overestimate the risk in vivo. If the substrate concentration is different from clinically relevant plasma concentrations, then the relative contribution of different enzymes involved in the substrate metabolism could be different from that in vivo, making the in vitro IC50 irrelevant.

      Determination of IC 50 shift, maximum inactivation rate (k inact ), and inactivator concentration at half‐maximal k inact (K I ) for TDI: The clinical value of in vitro models that address TDI of drug‐metabolizing enzymes has been reviewed (Venkatakrishnan et al., 2005; Grimm et al., 2009). IC50 shift (Obach et al., 2007) and projected IC50 (Atkinson et al., 2005) assays are generally the first screening methods to assess TDI. Determination of the kinetic parameters kinact and KI (Atkinson et al., 2005; Obach et al., 2007) is often carried out for promising drug candidates. The test compound is preincubated with an enzyme source (usually pooled human liver microsomes) in at least five different inhibitor concentrations to get the pseudo first‐order rate constant (kobs ), which is related to kinact and KI by the Michaelis–Menten equation:

      Determination of E max and IC 50 for CYP induction: Any in vitro system employed to evaluate induction potential of a candidate drug should retain activity for a considerable length of time. In vitro systems employed to study enzyme induction are cultured human hepatocytes (LeCluyse et al., 2000; Kato et al., 2005; Luo et al., 2005), immortalized hepatocytes (Mills et al., 2004), minimally derived cell lines (Aninat et al., 2006) like HepaRG cells (Kanebratt and Andersson, 2008), reporter gene assays (El‐Sankary et al., 2001; Persson et al., 2006; Sinz et al., 2006),

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