described thus far relates to the cell in interphase, the period between successive rounds of cell division. As the cell enters mitosis (Chapter 14) the organization of the nucleus changes dramatically. The DNA becomes more and more tightly packed and is revealed as a number of separate rods called chromosomes, of which there are usually 46 in human cells. The nucleolus disperses, and the nuclear envelope fragments. Upon completion of mitosis, these structural rearrangements are reversed and the nucleus resumes its typical interphase organization.
Mitochondria
Like nuclei, mitochondria are encapsulated by an outer and inner membrane (Figure 2.4). Perhaps the most distinctive feature of mitochondria is that the inner membrane is markedly elaborated and folded to increase its surface area. These shelf‐like projections, named cristae, make mitochondria among the most easily recognizable organelles (e.g. Figure 1.4 on page 8). The number of cristae, like the number of mitochondria themselves, depends upon the energy budget of the cell in which they are found. In muscle cells, which must contract and relax repeatedly over long periods of time, there are many mitochondria that contain numerous cristae; in fat cells, which generate little energy, there are few mitochondria and their cristae are less well developed. This gives a clue as to the function of mitochondria: they are the cell's power stations. Mitochondria produce the molecule adenosine triphosphate ( ATP ) (page 35), the cell's main energy currency that provides the energy to drive a host of cellular reactions and mechanisms. Mitochondria make ATP through the process of oxidative phosphorylation whereby oxygen is used to pass electrons from energy intermediates to a series of protein complexes on the inner mitochondrial membrane known as the electron transport chain. This results in the transfer of H+ out of the mitochondria and the generation of a concentration and voltage gradient. This gradient is subsequently tapped into by a protein known as ATP synthase which, as its name suggests, produces ATP. This process is essential for aerobic life and is the reason we breathe. We will return to ion gradients and the uses the cell puts them to in Chapter 9.
The great majority of proteins of the mitochondrion are encoded by nuclear genes and synthesized in the cytoplasm. But some of the information necessary for the function of mitochondria is stored within the organelle itself. Mitochondria contain many small circular DNA molecules (Table 1.1 on page 7) that are very different from the long, linear DNA molecules in the nucleus. This is strong evidence for the endosymbiotic theory of the origin of mitochondria (page 7), which proposes that the small circular DNA molecules found in mitochondria are all that is left of the chromosomes of the original symbiotic bacteria. Mitochondria also contain ribosomes (again, more like those of bacteria than the ribosomes in the cytoplasm of their own cell) which allows synthesis of a small subset of mitochondrial proteins.
Eukaryotic cells contain many sacs and tubes bounded by a single membrane. These are often rather similar in appearance and indeed if roughly spherical are lumped together as vesicles. Nevertheless, there are in fact distinct types specialized to carry out distinct functions.
Peroxisomes
Mitochondria are frequently found close to another membrane‐bound organelle, the peroxisome (Figure 1.2 on page 5). In human cells peroxisomes have a diameter of about 500 nm and their dense matrix contains a heterogeneous collection of proteins concerned with a variety of metabolic functions, some of which are only now beginning to be understood. Peroxisomes are so named because they are frequently responsible for the conversion of the highly reactive molecule hydrogen peroxide (H2O2), which is formed as a by‐product of the reactions in the mitochondrion, into water. This reaction is carried out by a protein called catalase, which sometimes forms an obvious crystal within the peroxisome. Catalase is an enzyme – a protein catalyst that increases the rate of a chemical reaction. In fact, it was one of the first enzymes to be discovered. In humans, peroxisomes are primarily associated with lipid metabolism. Understanding peroxisome function is important for a number of inherited human diseases such as X‐linked adrenoleukodystrophy where peroxisome malfunction and the consequent inability to metabolize lipid properly typically leads to death in childhood or early adulthood unless dietary lipid is extremely restricted.
Endoplasmic Reticulum
The endoplasmic reticulum (ER ) is a network of membrane‐enclosed tubes that run throughout the cell, forming a continuous mesh whose lumen (interior) is at all points separated from the cytosol by a single membrane. The membrane of the ER is continuous with the outer nuclear membrane (Figure 2.3). Two regions can be recognized in most cells, known as smooth ER and rough ER (Figure 1.2 on page 5). The basic difference is that the rough ER is covered in ribosomes, which gives it its rough appearance in the electron microscope.
The function of the smooth ER varies from tissue to tissue. In the ovaries, testes, and the adrenal gland it is where steroid hormones are made; in the liver it is the site of detoxication of foreign chemicals including drugs. Probably the most universal role of the smooth ER is the storage and sudden release of calcium ions. Calcium ions are pumped from the cytosol into the lumen of the smooth ER to more than 1000 times the concentration found in the cytosol. Many stimuli can cause this calcium to be released back into the cytosol, where it activates myriad cell processes (Chapter 10).
The rough ER is where cells make the proteins that will end up as integral membrane proteins in the plasma membrane, and the proteins that the cells will export (secrete) to the extracellular medium (such as the proteins of the extracellular matrix, page 8).
Golgi Apparatus
The Golgi apparatus, named after its discoverer, 1906 Nobel prize winner Camillo Golgi, is a distinctive stack of flattened sacks called cisternae (Figure 1.2 on page 5). The Golgi apparatus is the distribution point of the cell where proteins made within the rough ER are further processed and then directed to their final destination, the interior of the cell or the cell surface (see Chapter 12). Appropriately, given this central role, the Golgi apparatus is situated at the so‐called cell center, a point immediately adjacent to the nucleus that is also occupied by a structure called the centrosome. The centrosome helps to organize the cytoskeleton, the supporting framework of the cell (Chapter 13).
Lysosomes
Lysosomes
