Complex Data Structures11.9.1 L-PLS11.9.1.1 Simulated L-shaped Data11.9.1.2 Exo-L-PLS11.9.1.3 Endo-L-PLS11.9.1.4 L-PLS Cross-validation11.9.2 SO-PLS-PM11.9.2.1 Single SO-PLS-PM Model11.9.2.2 Multiple Paths in an SO-PLS-PM Model11.10 Software Packages11.10.1 R Packages11.10.2 MATLAB Toolboxes11.10.3 Python11.10.4 Commercial Software13 References
14 Index
List of Figures
1 Chapter 1Figure 1.7 L-shape data of...Figure 1.1 High-level...Figure 1.2 Idea of dimension...Figure 1.3 Design of the plant...Figure 1.4 Scores on the first...Figure 1.5 Idea of copy number...Figure 1.6 Plot of the Raman...Figure 1.8 Phylogeny of some...Figure 1.9 The idea of common...
2 Chapter 2Figure 2.1 Idea of dimension reduction...Figure 2.2 Geometry of PCA...Figure 2.3 Score (a) and loading...Figure 2.4 PLS validated explained...Figure 2.5 Score and loading plots...Figure 2.6 Raw and normalised...Figure 2.7 Numerical representations...Figure 2.8 Classical (a) and...Figure 2.9 Classical (a) and...Figure 2.10 SCA for two data...Figure 2.11 The block scores...Figure 2.12 Two column-spaces...Figure 2.13 Common and distinct...Figure 2.14 Common components...Figure 2.15 Visualisation of a response...Figure 2.16 Fitted values versus...Figure 2.17 Simple linear regression...Figure 2.18 Two-variable multiple...Figure 2.19 Two component PCA...Figure 2.20 Illustration of true...Figure 2.21 Visualisation of bias...Figure 2.22 Learning curves showing...Figure 2.23 Visualisation of the...Figure 2.24 Cumulative explained...Figure 2.25 Null distribution...
3 Chapter 3Figure 3.1 Skeleton of a three-block data...Figure 3.2 Skeleton of a four-block data...Figure 3.3 Skeleton of a three-block data...Figure 3.4 Skeleton of a three-block...Figure 3.5 Skeleton of a four-block...Figure 3.6 Topology of a three-block...Figure 3.7 Topology of a three-block...Figure 3.8 Different arrangements...Figure 3.9 Unsupervised combination...Figure 3.10 Supervised three-set problem...Figure 3.11 Supervised L-shape problem...Figure 3.12 Path model structure...Figure 3.13 Idea of linking two...Figure 3.14 Different linking...Figure 3.15 Idea of linking...Figure 3.16 Different linking...Figure 3.17 Treating common and distinct...
4 Chapter 4Figure 4.1 Explanation of the scale...Figure 4.2 Topology of interactions...Figure 4.3 The RV and partial RV...Figure 4.4 Decision tree for selecting...
5 Chapter 5Figure 5.1 Unsupervised analysis...Figure 5.2 Illustration explaining...Figure 5.3 The idea of common...Figure 5.4 Proportion of explained...Figure 5.5 Row-spaces visualised...Figure 5.6 Difference between weights...Figure 5.7 The logistic function...Figure 5.8 CNA data visualised...Figure 5.9 Score plot of the CNA...Figure 5.10 Plots for selecting...Figure 5.11 Biplots from PCA-GCA...Figure 5.12 Amount of explained...Figure 5.13 Amount of explained...Figure 5.14 Scores (upper part)...Figure 5.17 True design used...Figure 5.15 ACMTF as applied...Figure 5.16 True design used...Figure 5.18 Example of the properties...Figure 5.19 Quantification of modes...Figure 5.20 Linking the blocks...Figure 5.21 Decision tree...Figure 5.22 Decision tree for...
6 Chapter 6Figure 6.1 ASCA decomposition...Figure 6.2 A part of the ASCA...Figure 6.3 The ASCA scores...Figure 6.4 The ASCA scores on the factor...Figure 6.5 The ASCA scores on the interaction...Figure 6.6 PCA on toxicology data...Figure 6.7 ASCA on toxicology data...Figure 6.8 PARAFASCA on toxicology...Figure 6.9 Permutation example...Figure 6.10 Permutation test...Figure 6.11 ASCA candy scores...Figure 6.12 ASCA assessor scores...Figure 6.13 ASCA assessor and candy...Figure 6.14 PE-ASCA of the NMR metabolomics...Figure 6.15 Tree for selecting...
7 Chapter 7Figure 7.1 Conceptual illustration...Figure 7.2 Illustration of link...Figure 7.3 Cross-validated explained...Figure 7.4 Super-weights (w) for the...Figure 7.5 Block-weights (wm) for first...Figure 7.6 Block-scores (tm, for left...Figure 7.7 Classification by regression...Figure 7.8 AUROC values of different...Figure 7.9 Super-scores...Figure 7.10 Linking structure...Figure 7.11 The SO-PLS iterates...Figure 7.20 CV-ANOVA results...Figure 7.13 Måge plot...Figure 7.12 The CVANOVA...Figure 7.14 PCP plots for wine...Figure 7.15 Måge plot showing...Figure 7.16 Block-wise scores...Figure 7.17 Block-wise (projected)...Figure 7.18 Block-wise loadings...Figure 7.19 Måge plot...Figure 7.21 Loadings from Principal...Figure 7.22 RMSEP for fish data...Figure 7.23 Regression coefficients...Figure 7.24 SO-PLS results using...Figure 7.25 Illustration of the idea...Figure 7.26 PO-PLS calibrated/fitted...Figure 7.27 PO-PLS calibrated...Figure 7.28 PO-PLS common scores...Figure 7.29 PO-PLS common...Figure 7.30 PO-PLS distinct loadings...Figure 7.31 ROSA component selection...Figure 7.32 Cross-validated explained...Figure 7.33 ROSA weights...Figure 7.34 Summary of cross-validated...Figure 7.35 The decision paths...
8 Chapter 8Figure 8.1 Figure (a)–(c) represent...Figure 8.2 Conceptual illustration...Figure 8.3 Topologies for four...Figure 8.4 Scheme for information...Figure 8.5 Preference mapping...Figure 8.6 Results from consumer...Figure 8.7 Results from consumer liking...Figure 8.8 Relations between segments...Figure 8.9 Topology for the extension...Figure 8.10 L-block scheme with...Figure 8.11 Endo-L-PLS results...Figure 8.12 Classification...Figure 8.13 (a) Data structure for labelled...Figure 8.14 Tree for selecting methods...
9 Chapter 9Figure 9.1 General setup for fusing heterogeneous...Figure 9.2 Score plots of IDIOMIX...Figure 9.3 True design used in mixture...Figure 9.4 Cross-validation results...Figure 9.5 Explained variances...Figure 9.6 From multiblock data...Figure 9.7 Decision tree for selecting...
10 Chapter 10Figure 10.1 Results from multiblock...Figure 10.2 Pie chart of the sources...Figure 10.3 Flow chart...Figure 10.4 An illustration of...Figure 10.5 Path diagram for a wine...Figure 10.6 Wine data. PCP plots...Figure 10.7 An illustration of the multigroup...Figure 10.8 Decision tree for selecting...
11 Chapter 11Figure 11.1 Output from use of scoreplot...Figure 11.2 Output from use of loadingplot...Figure 11.3 Output from use of scoreplot...Figure 11.4 Output from use of loadingplot...Figure 11.5 Output from use of plot...Figure 11.6 Output from use of scoreplot()...Figure 11.7 Output from use of scoreplot()...Figure 11.8 Output from use of loadingplot()...Figure 11.9 Output from use of scoreplot()...Figure 11.10 Output from use of loadingplot()...Figure 11.11 Output from use of scoreplot()...Figure 11.12 Output from use of maage().Figure 11.13 Output from use of maageSeq().Figure 11.14 Output from use of loadingplot()...Figure 11.15 Output from use of scoreplot()...Figure 11.16 Output from use of scoreplot()...Figure 11.17 Output from use of plot()...Figure 11.18 Output from use of scoreplot()...Figure 11.19 Output from use of loadingplot()...Figure 11.20 Output from use of loadingplot()...Figure 11.21 Output from use of scoreplot()...Figure 11.22 Output from use of image()...Figure 11.23 Output from use of image()...Figure 11.24 Output from use of scoreplot()...Figure 11.25 Output from use of plot()...
List of Tables
1 Chapter 1Table 1.1 Overview of methods...Table 1.2 Abbreviations of the...
2 Chapter 2Table 2.1 Formal treatment of types...Table 2.2 Different methods for fusing...Table 2.3 The matrices of which the weights...
3 Chapter 4Table 4.1 Overview of the data sets...
4 Chapter 5Table 5.1 Overview of methods...Table 5.2 Different types of SCA...Table 5.3 Proportions of explained...Table 5.4 Properties of methods...
5 Chapter 6Table 6.1 Overview of methods...
6 Chapter
