Biochemistry For Dummies. John T. Moore

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Biochemistry For Dummies - John T. Moore

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nonmetals) polar substances, such as alcohols and sugars, also are soluble in water because of the dipole-dipole (or hydrogen-bonding) interactions. However, covalently bonded nonpolar substances, such as fats and oils, aren’t soluble in water. Check out Chemistry For Dummies (written by this book’s coauthor, John T. Moore, and published by Wiley) for a discussion of chemical bonding.

      

Polar molecules, because of their ability to interact with water molecules, are classified as hydrophilic (water-loving). Nonpolar molecules, which don’t appreciably interact with (dissolve in) water, are classified as hydrophobic (water-hating). Some molecules are amphipathic because they have both hydrophilic and hydrophobic regions.

Chemical structure of a typical amphipathic (both water-loving and water-hating) molecule.

      FIGURE 2-2: Structure of a typical amphipathic (both water-loving and water-hating) molecule.

      Certain amphipathic molecules, such as soap molecules, can form micelles, or very tiny droplets that surround insoluble materials. This characteristic is the basis of the cleaning power of soaps and detergents. The hydrophobic portion of the molecule (a long hydrocarbon chain) dissolves in a nonpolar substance, such as normally insoluble grease and oil, leaving the hydrophilic portion (commonly an ionic end) out in the water. Soap or detergent breaks up the grease or oil and keeps it in solution so it can go down the drain.

Chemical structure of a micelle, composed of amphipathic molecules, with their hydrophilic heads pointing out.

      In aqueous solutions — especially in biological systems — the concentration of hydrogen ions math is very important. Biological systems often take great pains to make sure that their hydrogen ion concentration — represented as math or by the measurement of pH (the measure of acidity in a solution) — doesn’t change.

      Even minor changes in hydrogen ion concentration can have dire consequences to a living organism. For example, the human body can function properly only if its blood’s hydrogen ion concentration falls within a very small range. Hydrogen ion concentrations higher or lower than this range can cause death.

      Because living organisms are so dependent on pH, we review the concepts of acids, bases, and pH in the following sections.

      Achieving equilibrium

      When the concentrations of hydrogen ions math and hydroxide ions math are the same, a solution is neutral. If the hydrogen ion concentration exceeds the hydroxide ion concentration, the solution is acidic. If the hydroxide ion concentration is greater, the solution is basic. These ions are related through a chemical equilibrium.

      

Acidic solutions, such as lemon juice, taste sour. Basic solutions, such as tonic water, taste bitter. (The addition of gin doesn’t change the bitter taste!)

math

      

You often see math represented as math.

      The double arrow math indicates that this reaction (represented by the equation) is an equilibrium; as such, there must be an associated equilibrium constant (K). The equilibrium constant in the preceding equation is Kw. The value of Kw is the product of the concentrations of the hydrogen ion and the hydroxide ion:

math

      The value of the constant Kw, like all Ks, is only constant if the temperature is constant. In the human body, where math, math.

      In pure water, at 25°C, math. The hydroxide ion concentration is the same as the hydrogen ion concentration because they’re formed in equal amounts during the autoionization reaction. Keep in mind that math only in pure water.

      

M is a concentration term, the molarity. Molarity is the number of moles of solute per liter of solution.

      Understanding the pH scale

      Expressing hydrogen ion concentrations in an exponential form, such as math, isn’t always convenient. Thankfully, you have a way of simplifying the representation of the hydrogen ion concentration: the pH. You can calculate the pH for any solution by using the following equation:

math

      For instance, in the case of a solution with a hydrogen ion concentration of math, the pH calculation would be

math

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