with Minimum DNA
6.3 DNA Extraction from Half Grain
6.4 GBS with Half Seed
6.5 Applications of GBS as Diagnostic Tool
6.6 Summary
References
13 7 Genomic Selection: Advances, Applicability, and Challenges 7.1 Introduction 7.2 Natural Selection 7.3 Breeding Selection 7.4 Marker‐assisted Selection 7.5 Genomic Selection 7.6 Genotyping for Genomic Selection 7.7 Integration of Genomic Selection in MAS Program 7.8 The Efficiency of Genomic Selection for Complex Traits 7.9 Integration of Genomic Selection in the Varietal Trial Program 7.10 Cost Comparison of GS vs MAS References
14 8 Analytical Pipelines for the GBS Analysis 8.1 Introduction 8.2 Applications of NGS 8.3 NGS Sequencing Platforms 8.4 Tools for NGS Data Analysis 8.5 Generalized Procedure for NGS Data Analysis 8.6 Variant Annotation 8.7 Role of NGS Informatics in Identifying Variants 8.8 Genotyping by Sequencing 8.9 Analytical Pipelines for GBS 8.10 Comparison of GBS Pipelines References
15 9 Recent Advances and Applicability of GBS, GWAS, and GS in Maize 9.1 Introduction 9.2 Maize Genetics 9.3 Importance of Genomics and Genotyping‐based Applications in Maize Breeding Programs 9.4 GBS‐based QTL Mapping in Maize 9.5 GBS Protocols and Analytical Pipelines for Maize 9.6 Maize Genome Sequencing and Resequencing 9.7 Genotyping‐by‐Sequencing‐based GWAS and GS Efforts in Maize 9.8 Summary References
16 10 Recent Advances and Applicability of GBS, GWAS, and GS in Soybean 10.1 Introduction 10.2 GBS Efforts in Soybean 10.3 High‐Density Linkage Maps in Soybean 10.4 GBS Protocols and Analytical Pipelines for Soybean 10.5 GBS‐based QTL Mapping Efforts in Soybean 10.6 Soybean Genome Sequencing and Resequencing 10.7 GBS‐based GWAS Efforts in Soybean 10.8 GBS‐based Genomic Selection Efforts in Soybean References
17 11 Advances and Applicability of Genotyping Technologies in Cotton Improvement 11.1 Introduction 11.2 Challenges due to Polyploidy in Cotton 11.3 Applications of Genomics and Genotyping for Cotton Breeding Programs 11.4 Genotyping Efforts in Cotton 11.5 High‐Density Linkage Maps in Cotton 11.6 Whole‐Genome Sequencing of Cotton Germplasm 11.7 Application of GBS Technology in Cotton Research 11.8 GBS‐based Bi‐Parental QTL Mapping and Association Mapping in Cotton 11.9 Summary and Outlook References
18 12 Recent Advances and Applicability of GBS, GWAS, and GS in Millet Crops* 12.1 Introduction 12.2 GBS Efforts in Millet Crops 12.3 High‐density Linkage Maps in Millet Crops 12.4 GBS‐based QTL Mapping Efforts in Millet Crops 12.5 Genome Sequencing and Resequencing of Millet Crops 12.6 GBS‐based GWAS Efforts in Millet Crops 12.7 GBS‐based Genomic Selection (GS) Efforts in Millet Crops
