References
19 13 Recent Advances and Applicability of GBS, GWAS, and GS in Pigeon Pea 13.1 Introduction 13.2 Pigeon Pea Sequencing and Resequencing 13.3 Development of Pigeon Pea High‐density Genotyping Platforms 13.4 Development of High‐density Linkage Maps in Pigeon Pea 13.5 QTL Analysis Using High‐density Genotyping Platforms and GBS 13.6 GWAS Efforts in Pigeon Pea 13.7 Genomic Selection (GS) Efforts in Pigeon Pea 13.8 Summary References
20 14 Opportunity and Challenges for High‐throughput Genotyping in Sugarcane 14.1 Introduction 14.2 Sugarcane Genome and Genetics 14.3 Genetic Studies and Marker Systems 14.4 Genotyping‐by‐Sequencing (GBS) 14.5 SNP Calling Using GBS Pipelines 14.6 Sugarcane Genome Sequencing 14.7 Linkage and QTL Mapping in Sugarcane 14.8 GWAS in Sugarcane 14.9 Genomic Selection in Sugarcane 14.10 Summary References
21 15 Recent Advances and Applicability of GBS, GWAS, and GS in Polyploid Crops 15.1 Introduction 15.2 Challenges for Genotyping in Polyploidy Crops 15.3 Genotyping Platforms for Barley 15.4 Long‐Read Sequencing‐based Genotyping in Polyploid Canola 15.5 Peanut Genotyping with Targeted Amplicon Sequencing 15.6 SNP Genotyping Methods and Platforms Available for Sugarcane 15.7 Recent Advances and Applicability of GBS, GWAS, and GS in Polyploidy Crop Species 15.8 Haplotype‐based Genotyping 15.9 GBS Analytical Pipelines for Polyploids 15.10 GBS‐based QTL Mapping Efforts in Polyploids 15.11 GWAS and GS Using High‐throughput Genotyping in Polyploidy Crops References
22 16 Recent Advances and Applicability of GBS, GWAS, and GS in Oilseed Crops 16.1 Introduction 16.2 GBS Efforts in Oilseed Crops 16.3 High‐density Linkage Maps for Oilseed Crops 16.4 GBS Protocols and Analytical Pipelines 16.5 GBS‐based QTL Mapping Efforts in Oilseed Crops 16.6 GBS‐based GWAS Efforts in Oilseed Crops References
23 Index
List of Tables
1 Chapter 1Table 1.1 Details of the other important molecular markers.Table 1.2 Comparison between different marker techniques commonly used in p...Table 1.3 List of important online SNP databases.
2 Chapter 2Table 2.1 Customized SNP array details in plant species.
3 Chapter 4Table 4.1 The different software used for quantitative loci (QTL) mapping....Table 4.2 Studies that utilized high‐throughput genotyping for QTL mapping....
4 Chapter 5Table 5.1 Popular bioinformatics software and tools available for GWAS anal...Table 5.2 Genome‐wide association studies (GWAS) conducted for dissection o...Table 5.3 Candidate genes identified through genome‐wide association studie...
5 Chapter 7Table 7.1 Table showing different crop plants where GBS was used (Adapted f...Table 7.2 Table showing various GS studies carried out in different crops (...
6 Chapter 8Table 8.1 Different variant identification tools.Table 8.2 Tools for variant annotation.
7 Chapter 9Table 9.1 Linkage map developed in maize using genotyping by sequencing (GB...Table 9.2 List of GBS‐based QTL mapping studies in maize.Table 9.3 GBS‐based GWAS efforts in maize.
8 Chapter 10Table 10.1 High‐throughput genomics platforms used for soybean genotyping....Table 10.2 List of GBS‐based QTL mapping studies in soybean.Table 10.3 Details of efforts performed for whole‐genome resequencing and r...Table 10.4 List of GBS‐based GWAS studies in soybean.
9 Chapter 11Table 11.1 List of genomic resources available in cotton.Table 11.2 Development of various interspecific and intraspecific linkage (...Table 11.3 List of genome wide association studies (GWAS) in cotton.Table 11.4 List of GBS‐based QTL mapping studies in cotton.
10 Chapter
