Contamination with urine or water should be avoided.
4. Recommendation for collection: three specimens collected, one every other day or within a 10-day time frame.
Note: There are some exceptions; see Table 2.1.
5. Liquid stool: examine or preserve within 30 min of passage (trophozoites). Soft stool: examine or preserve within 1 h of passage (trophozoites and cysts). Formed stool: examine or preserve within 24 h of passage. Note that Dientamoeba fragilis trophozoites can be found in formed stool specimens as well as liquid specimens.
There are a number of reasons why a lag time may occur from the time of specimen passage until examination in the laboratory (e.g., the workload in the laboratory or the transit distance or time for the specimen to reach the facility). To preserve protozoan morphology and to prevent the continued development of some helminth eggs and larvae, the stool specimens can be placed in preservative immediately after passage (by the patient using a collection kit) or once the specimen is received by the laboratory. There are several fixatives available; the more common ones, including formalin, Merthiolate (thimerosal)-iodine-formalin (MIF), sodium acetate-acetic acid-formalin (SAF), Schaudinn’s fluid (with or without polyvinyl alcohol [PVA]), the single-vial systems, and the Universal Fixative, are discussed in detail (Table 2.4). Regardless of the fixative selected, adequate mixing of the specimen and preservative is mandatory. A flow diagram for preservation and processing is shown in Fig. 2.3.
Figure 2.3 Flow diagram for preservation and processing of stool specimens. As mentioned in the text, the examination of fecal specimens using the ova and parasite examination is not considered complete unless a concentration and a permanent stained smear are examined for every specimen submitted to the laboratory. For a fresh specimen, a direct wet mount should be performed if the specimen is very soft to liquid; the complete ova and parasite examination would include the direct wet mount, the concentration, and the permanent stained smear. If the specimen is submitted in preservative, the direct wet mount should be eliminated (no motility is possible); the complete ova and parasite examination would include the concentration and the permanent stained smear (1, 2). doi:10.1128/9781555819002.ch2.f2.3
Note When selecting an appropriate fixative, keep in mind that a permanent stained smear is mandatory for a complete examination for parasites (1, 2, 26). It is also important to remember that disposal regulations for compounds containing mercury are becoming more restrictive; each laboratory will have to check applicable state and federal regulations to help determine fixative options.
Note It is important to remember that when using fecal immunoassays for the Entamoeba histolytica/E. dispar group or Entamoeba histolytica, fresh or frozen stool is required (in some cases Cary-Blair may be acceptable, but check the package insert prior to use). To date, stool submitted in routine fecal fixatives is not acceptable for these particular fecal immunoassays.
Formalin
Formalin has been used for many years as an all-purpose fixative that is appropriate for helminth eggs and larvae and for protozoan cysts, oocysts, and spores. Two concentrations are commonly used: 5%, which is recommended for preservation of protozoan cysts, and 10%, which is recommended for helminth eggs and larvae. Although 5% is often recommended for all-purpose use, most commercial manufacturers provide 10%, which is more likely to kill all helminth eggs (Fig. 2.4). To help maintain organism morphology, the formalin can be buffered with sodium phosphate buffers, i.e., neutral formalin. Selection of specific formalin formulations is at the user’s discretion. Aqueous formalin will permit the examination of the specimen as a wet mount only, a technique much less accurate than a permanent stained smear for the identification of intestinal protozoa. However, the fecal immunoassays for Giardia lamblia (G. duodenalis, G. intestinalis) and Cryptosporidium spp. can be performed from the aqueous formalin vial. Fecal mmunoassays for the Entamoeba histolytica/E. dispar group and Entamoeba histolytica are limited to fresh or frozen fecal specimens (some kits may work with stool submitted in Cary-Blair; check the package insert). After centrifugation, special stains for the coccidia (modified acid-fast stains) and the microsporidia (modified trichrome stains) can be performed from the concentrate sediment obtained from formalin-preserved stool material. The most common formalin preparation is 10% formalin, prepared as follows:
Figure 2.4 When the stool specimen is added to the vial, the final ratio of stool to preservative is about 1:3. doi:10.1128/9781555819002.ch2.f2.4
Dilute 100 ml of formaldehyde with 900 ml of 0.85% NaCl solution. (Distilled water may be used instead of saline solution.)
Note Formaldehyde is normally purchased as a 37 to 40% HCHO solution; however, for dilution, it should be considered to be 100%.
If you want to use buffered formalin, the recommended approach (1, 3) is to mix thoroughly 6.10 g of Na2HPO4 and 0.15 g of NaH2PO4 and store the dry mixture in a tightly closed bottle. Prepare 1 liter of either 10 or 5% formalin, and add 0.8 g of the buffer salt mixture.
Protozoan cysts (not trophozoites), coccidian oocysts, microsporidian spores, helminth eggs, and larvae are well preserved for long periods in 10% aqueous formalin. Hot (60°C) formalin can be used for specimens containing helminth eggs, since in room-temperature formalin, some thick-shelled eggs (e.g., Ascaris lumbricoides) continue to develop, become infective, and remain viable for long periods. Several grams of fecal material should be thoroughly mixed in 5 or 10% formalin.
To collect large numbers of cysts, eggs, or larvae relatively free from other debris, the whole stool specimen is mixed in water and then strained through several layers of gauze. The suspension is allowed to sediment in a cone-shaped glass or flask for 1 h or more, and the supernatant fluid is discarded. The specimen may be washed several times in this manner before the sediment is finally fixed in hot 10% formalin, as mentioned above. When working with watery diarrhea specimens from patients with suspected cases of coccidiosis or microsporidiosis, the specimen should not be strained through gauze (oocysts and small bits of mucus may cling to the gauze); centrifugation (500 × g for 10 min) is necessary to sediment the oocysts and/or spores.
MIF
MIF (5) is a good stain preservative for most kinds
